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标题：Genome sequence and description of Pantoea septica strain FF5
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作者：Cheikh Ibrahima Lo ; Roshan Padhmanabhan ; Oleg Mediannikov 等
期刊名称：Environmental Microbiome
印刷版ISSN：2524-6372
出版年度：2015
卷号：10
期号：1
页码：1-11
DOI：10.1186/s40793-015-0083-0
摘要：Strain FF5 was isolated from the skin flora of a healthy Senegalese 35-year-old woman. This strain was identified as belonging to the species Pantoea septica based on rpoB sequence identity of 99.7 % with Pantoea septica strain LMG 5345T and a highest MALDI-TOF-MS score of 2.3 with Pantoea septica. Like P. septica, this FF5 strain is a Gram-negative, aerobic, motile, and rod-shaped bacterium. Currently, 17 genomes have been sequenced within the genus Pantoea but none for Pantoea septica. Herein, we compared the genomic properties of strain FF5 to those of other species within the genus Pantoea. The genome of this strain is 4,548,444 bp in length (1 chromosome, no plasmid) with a G C content of 59.1 % containing 4125 protein-coding and 68 RNA genes (including 2 rRNA operons). We also performed an extensive phenotypic analysis showing new phenotypic characteristics such as the production of alkaline phosphatase, acid phosphatase and naphthol-AS-BI-phosphohydrolase.
关键词：Pantoea septica;Genome;Taxonogenomics;Culturomics;Senegal