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标题：Draft genome sequences of three fungal-interactive Paraburkholderia terrae strains, BS007, BS110 and BS437
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作者：Akbar Adjie Pratama ; Irshad Ul Haq ; Rashid Nazir 等
期刊名称：Environmental Microbiome
印刷版ISSN：2524-6372
出版年度：2017
卷号：12
期号：1
页码：1-14
DOI：10.1186/s40793-017-0293-8
摘要：Here, we report the draft genome sequences of three fungal-interactive strains, denoted BS110, BS007 and BS437. Phylogenetic analyses showed that the three strains belong to clade II of the genus , which was recently renamed . This novel genus primarily contains environmental species, encompassing non-pathogenic plant- as well as fungal-interactive species. The genome of strain BS007 consists of 11,025,273 bp, whereas those of strains BS110 and BS437 have 11,178,081 and 11,303,071 bp, respectively. Analyses of the three annotated genomes revealed the presence of (1) a large suite of substrate capture systems, and (2) a suite of genetic systems required for adaptation to microenvironments in soil and the mycosphere. Thus, genes encoding traits that potentially confer fungal interactivity were found, such as type 4 pili, type 1, 2, 3, 4 and 6 secretion systems, and biofilm formation (PGA, alginate and pel) and glycerol uptake systems. Furthermore, the three genomes also revealed the presence of a highly conserved five-gene cluster that had previously been shown to be upregulated upon contact with fungal hyphae. Moreover, a considerable number of prophage-like and CRISPR spacer sequences was found, next to genetic systems responsible for secondary metabolite production. Overall, the three strains possess the genetic repertoire necessary for adaptation to diverse soil niches, including those influenced by soil fungi.
关键词：Paraburkholderia terrae;Mycosphere;Fungal-interactive;Genome