文章基本信息

标题：ASJA: A Program for Assembling Splice Junctions Analysis
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作者：Jingjing Zhao ; Qin Li ; Yuchen Li 等
期刊名称：Computational and Structural Biotechnology Journal
印刷版ISSN：2001-0370
出版年度：2019
卷号：17
页码：1143-1150
DOI：10.1016/j.csbj.2019.08.001
出版社：Computational and Structural Biotechnology Journal
摘要：RNA splicing may generate different kinds of splice junctions, such as linear, back-splice and fusion junctions. Only a limited number of programs are available for detection and quantification of splice junctions. Here, we present Assembling Splice Junctions Analysis (ASJA), a software package that identifies and characterizes all splice junctions from high-throughput RNA sequencing (RNA-seq) data. ASJA processes assembled transcripts and chimeric alignments from the STAR aligner and StringTie assembler. ASJA provides the unique position and normalized expression level of each junction. Annotations and integrative analysis of the junctions enable additional filtering. It is also appropriate for the identification of novel junctions. ASJA is available at https://github.com/HuangLab-Fudan/ASJA .
关键词：RNA splicing ; Splice junctions ; RNA-seq ; Circular RNA