文章基本信息

标题：Evolutionary Analysis and Motif Discovery in Pinopsin from Vertebrates
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作者：Akash Kumar ; Mohd. Zakir Khawaja ; Vivek Dhar Dwivedi 等
期刊名称：Indian Journal of Bioinformatics and Biotechnology
印刷版ISSN：2319-6580
电子版ISSN：2319-6599
出版年度：2013
卷号：2
期号：3
页码：65-68
语种：English
出版社：Indian Society for Education and Environment
摘要：In the present investigation, total nine protein sequences of Pinopsin from different organisms of vertebrates were obtained from GenPept database and only 347 characters of each sequence were considered for motif discovery, motif family analysis and phylogenetic analysis. Three different motifs were discovered by MEME program where minimum motif width was 6 and maximum motif width was 50. All three discovered motifs were aligned using MAST tool which revealed the similarity between all of three submitted motif's sequence. The motif matches shown have a position p-value less than 0.0001. Each of the following 9 sequences has an E-value less than 10. Two major sequence clusters were constructed by phylogenetic analysis.