首页    期刊浏览 2024年12月13日 星期五
登录注册

文章基本信息

  • 标题:Biomedical text summarization to support genetic database curation: using Semantic MEDLINE to create a secondary database of genetic information
  • 作者:T. Elizabeth Workman ; Marcelo Fiszman ; John F Hurdle
  • 期刊名称:Bulletin of the Medical Library Association
  • 印刷版ISSN:0025-7338
  • 出版年度:2010
  • 卷号:98
  • 期号:4
  • 页码:273-281
  • DOI:10.3163/1536-5050.98.4.003
  • 语种:English
  • 出版社:Medical Library Association
  • 摘要:Objective: This paper examines the development and evaluation of an automatic summarization system in the domain of molecular genetics. The system is a potential component of an advanced biomedical information management application called Semantic MEDLINE and could assist librarians in developing secondary databases of genetic information extracted from the primary literature. Methods: An existing summarization system was modified for identifying biomedical text relevant to the genetic etiology of disease. The summarization system was evaluated on the task of identifying data describing genes associated with bladder cancer in MEDLINE citations. A gold standard was produced using records from Genetics Home Reference and Online Mendelian Inheritance in Man. Genes in text found by the system were compared to the gold standard. Recall, precision, and F-measure were calculated. Results: The system achieved recall of 46%, and precision of 88% (F-measure = 0.61) by taking Gene References into Function (GeneRIFs) into account. Conclusion: The new summarization schema for genetic etiology has potential as a component in Semantic MEDLINE to support the work of data curators.
Loading...
联系我们|关于我们|网站声明
国家哲学社会科学文献中心版权所有