文章基本信息

标题：A model for the cooperative free energy transduction and kinetics of ATP hydrolysis by F1-ATPase
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作者：Yi Qin Gao ; Wei Yang ; Rudolph A. Marcus 等
期刊名称：Proceedings of the National Academy of Sciences
印刷版ISSN：0027-8424
电子版ISSN：1091-6490
出版年度：2003
卷号：100
期号：20
页码：11339-11344
DOI：10.1073/pnas.1334188100
语种：English
出版社：The National Academy of Sciences of the United States of America
摘要：Although the binding change mechanism of rotary catalysis by which F1-ATPase hydrolyzes ATP has been supported by equilibrium, kinetic, and structural observations, many questions concerning the function remain unanswered. Because of the importance of this enzyme, the search for a full understanding of its mechanism is a key problem in structural biology. Making use of the results of free energy simulations and experimental binding constant measurements, a model is developed for the free energy change during the hydrolysis cycle. This model makes possible the development of a kinetic scheme for ATP hydrolysis by F1-ATPase, in which the rate constants are associated with specific configurations of the {beta} subunits. An essential new element is that the strong binding site for ADP,Pi is shown to be the {beta}DP site, in contrast to the strong binding site for ATP, which is {beta}TP. This result provides a rationale for the rotation of the {gamma} subunit, which induces the cooperativity required for a tri-site binding change mechanism. The model explains a series of experimental data, including the ATP concentration dependence of the rate of hydrolysis and catalytic site occupation for both the Escherichia coli F1-ATPase (EcF1) and Thermophilic Bacillus PS3 F1-ATPase (TF1), which have different behavior.