文章基本信息

标题：Reverse engineering gene networks using singular value decomposition and robust regression
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作者：M. K. Stephen Yeung ; Jesper Tegnér ; James J. Collins 等
期刊名称：Proceedings of the National Academy of Sciences
印刷版ISSN：0027-8424
电子版ISSN：1091-6490
出版年度：2002
卷号：99
期号：9
页码：6163-6168
DOI：10.1073/pnas.092576199
语种：English
出版社：The National Academy of Sciences of the United States of America
摘要：We propose a scheme to reverse-engineer gene networks on a genome-wide scale using a relatively small amount of gene expression data from microarray experiments. Our method is based on the empirical observation that such networks are typically large and sparse. It uses singular value decomposition to construct a family of candidate solutions and then uses robust regression to identify the solution with the smallest number of connections as the most likely solution. Our algorithm has O(log N) sampling complexity and O(N4) computational complexity. We test and validate our approach in a series of in numero experiments on model gene networks.