文章基本信息

标题：On a fundamental structure of gene networks in living cells
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作者：Nataly Kravchenko-Balasha ; Alexander Levitzki ; Andrew Goldstein 等
期刊名称：Proceedings of the National Academy of Sciences
印刷版ISSN：0027-8424
电子版ISSN：1091-6490
出版年度：2012
卷号：109
期号：12
页码：4702-4707
DOI：10.1073/pnas.1200790109
语种：English
出版社：The National Academy of Sciences of the United States of America
摘要：Computers are organized into hardware and software. Using a theoretical approach to identify patterns in gene expression in a variety of species, organs, and cell types, we found that biological systems similarly are comprised of a relatively unchanging hardware-like gene pattern. Orthogonal patterns of software-like transcripts vary greatly, even among tumors of the same type from different individuals. Two distinguishable classes could be identified within the hardware-like component: those transcripts that are highly expressed and stable and an adaptable subset with lower expression that respond to external stimuli. Importantly, we demonstrate that this structure is conserved across organisms. Deletions of transcripts from the highly stable core are predicted to result in cell mortality. The approach provides a conceptual thermodynamic-like framework for the analysis of gene-expression levels and networks and their variations in diseased cells.
关键词：disease patterns ; firmware ; genomics ; surprisal analysis ; thermodynamic analysis