文章基本信息

标题：A conserved protonation-dependent switch controls drug binding in the Abl kinase
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作者：Yibing Shan ; Markus A. Seeliger ; Michael P. Eastwood 等
期刊名称：Proceedings of the National Academy of Sciences
印刷版ISSN：0027-8424
电子版ISSN：1091-6490
出版年度：2009
卷号：106
期号：1
页码：139-144
DOI：10.1073/pnas.0811223106
语种：English
出版社：The National Academy of Sciences of the United States of America
摘要：In many protein kinases, a characteristic conformational change (the "DFG flip") connects catalytically active and inactive conformations. Many kinase inhibitors--including the cancer drug imatinib--selectively target a specific DFG conformation, but the function and mechanism of the flip remain unclear. Using long molecular dynamics simulations of the Abl kinase, we visualized the DFG flip in atomic-level detail and formulated an energetic model predicting that protonation of the DFG aspartate controls the flip. Consistent with our model's predictions, we demonstrated experimentally that the kinetics of imatinib binding to Abl kinase have a pH dependence that disappears when the DFG aspartate is mutated. Our model suggests a possible explanation for the high degree of conservation of the DFG motif: that the flip, modulated by electrostatic changes inherent to the catalytic cycle, allows the kinase to access flexible conformations facilitating nucleotide binding and release.
关键词：conformational change ; DFG motif ; imatinib ; molecular dynamics simulation ; pH dependence