文章基本信息

标题：Energy analysis of chemistry for correct insertion by DNA polymerase β
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作者：Ping Lin ; Lars C. Pedersen ; Vinod K. Batra 等
期刊名称：Proceedings of the National Academy of Sciences
印刷版ISSN：0027-8424
电子版ISSN：1091-6490
出版年度：2006
卷号：103
期号：36
页码：13294-13299
DOI：10.1073/pnas.0606006103
语种：English
出版社：The National Academy of Sciences of the United States of America
摘要：X-ray crystallographic structures of human DNA polymerase [beta] with nonhydrolyzable analogs containing all atoms in the active site required for catalysis provide a secure starting point for a theoretical analysis (quantum mechanics/molecular mechanics) of the mechanism of chemistry without biasing of modeling assumptions as required in previous studies. These structures provide the basis for a detailed quantum mechanics/molecular mechanics study of the path for the complete transfer of a monophosphate nucleoside donor to the sugar acceptor in the active site. The reaction is largely associative with the main energetic step preceded by proton transfer from the terminal primer deoxyribose O3' to Asp-256. The key residues that provide electrostatic stabilization of the transition state are identified and compared with those identified by mutational studies.
关键词：quantum mechanics ; molecular mechanics ; reaction mechanism