文章基本信息

标题：RNA looping by PTB: Evidence using FRET and NMR spectroscopy for a role in splicing repression
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作者：Rajan Lamichhane ; Gerrit M. Daubner ; Judith Thomas-Crusells 等
期刊名称：Proceedings of the National Academy of Sciences
印刷版ISSN：0027-8424
电子版ISSN：1091-6490
出版年度：2010
卷号：107
期号：9
页码：4105-4110
DOI：10.1073/pnas.0907072107
语种：English
出版社：The National Academy of Sciences of the United States of America
摘要：Alternative splicing plays an important role in generating proteome diversity. The polypyrimidine tract-binding protein (PTB) is a key alternative splicing factor involved in exon repression. It has been proposed that PTB acts by looping out exons flanked by pyrimidine tracts. We present fluorescence, NMR, and in vivo splicing data in support of a role of PTB in inducing RNA loops. We show that the RNA recognition motifs (RRMs) 3 and 4 of PTB can bind two distant pyrimidine tracts and bring their 5' and 3' ends in close proximity, thus looping the RNA. Efficient looping requires an intervening sequence of 15 nucleotides or longer between the pyrimidine tracts. RRM3 and RRM4 bind the 5' and the 3' pyrimidine tracts, respectively, in a specific directionality and work synergistically for efficient splicing repression in vivo.
关键词：alternative splicing ; polypyrimidine tract–binding protein ; protein–RNA interactions