文章基本信息

标题：Probing static disorder in Arrhenius kinetics by single-molecule force spectroscopy
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作者：Tzu-Ling Kuo ; Sergi Garcia-Manyes ; Jingyuan Li 等
期刊名称：Proceedings of the National Academy of Sciences
印刷版ISSN：0027-8424
电子版ISSN：1091-6490
出版年度：2010
卷号：107
期号：25
页码：11336-11340
DOI：10.1073/pnas.1006517107
语种：English
出版社：The National Academy of Sciences of the United States of America
摘要：The widely used Arrhenius equation describes the kinetics of simple two-state reactions, with the implicit assumption of a single transition state with a well-defined activation energy barrier {Delta}E, as the rate-limiting step. However, it has become increasingly clear that the saddle point of the free-energy surface in most reactions is populated by ensembles of conformations, leading to nonexponential kinetics. Here we present a theory that generalizes the Arrhenius equation to include static disorder of conformational degrees of freedom as a function of an external perturbation to fully account for a diverse set of transition states. The effect of a perturbation on static disorder is best examined at the single-molecule level. Here we use force-clamp spectroscopy to study the nonexponential kinetics of single ubiquitin proteins unfolding under force. We find that the measured variance in {Delta}E shows both force-dependent and independent components, where the force-dependent component scales with F2, in excellent agreement with our theory. Our study illustrates a novel adaptation of the classical Arrhenius equation that accounts for the microscopic origins of nonexponential kinetics, which are essential in understanding the rapidly growing body of single-molecule data.
关键词：single-molecule force-clamp spectroscopy ; protein unfolding ; ubiquitin ; molecular dynamics simulations