Genetic tagging free-ranging white-tailed deer using hair snares.
Belant, Jerrold L. ; Seamans, Thomas W. ; Paetkau, David 等
ABSTRACT: Use of noninvasive DNA-based tissue sampling (e.g., hair,
scats) for individual identification in wildlife studies has increased
markedly in recent years. Although field techniques for collecting hair
samples have been developed for several species, we are unaware of their
use with free-ranging ungulates. From December 2004 to August 2005 we
evaluated the efficacy of barbed wire for snaring hair samples suitable
for genetic analyses from white-tailed deer (Odocoileus virginianus) on
trails and at baited sites. During initial trials on a semi-captive deer
herd in northern Ohio, deer demonstrated avoidance of barbed wire
positioned on game trails through four weeks but entered baited sites
with barbed wire in <3 days. Field trials on free-ranging deer in
Michigan using two snare configurations at baited sites checked at
one-or-two-week intervals also were successful in obtaining hair samples
suitable for extracting DNA. Number of hair samples appeared to increase
with deer activity. Number of hair samples and amount of hair in
individual samples were greater during winter and spring than during
summer. Adequate genetic material was present in 98% (n = 53) of samples
collected during winter. Obtaining hair samples noninvasively from
white-tailed deer has numerous applications including determining natal
origin, population monitoring, and density estimates. We recommend use
of baited sites encircled with a single strand of 15.5 gauge,
four-point, barbed wire 80 cm above ground attached to [greater than or
equal to] 3 trees. In treeless areas, metal or wood posts could be
substituted. Hair snare height and configuration could be adapted for
other ungulate species.
OHIO J SCI 107 (4): 50-56, 2007
INTRODUCTION
Overabundance of white-tailed deer (Odocoileus virginianus)
populations has become one of the most difficult issues facing wildlife
managers (Warren 1997). At high densities, deer browsing and herbivory
can adversely affect plant community composition and structure (Waller
and Alverson 1997, Frankland and Nelson 2003, Pedersen and Wallis 2004).
Cascading ecological effects include indirect influences on avian
composition and insect abundance (Miller et al. 1992, deCalesta 1994,
Ostfeld et al. 1996). Additionally, conflicts between humans and deer
may include agricultural loss, zoonoses, property damage to landscaping,
and collisions with vehicles (Conover et al. 1995, Conover 1997).
Similarly, deer overabundance is a pervasive management issue in
National Park units in the eastern United States (e.g., Shafer-Nolan
1997); with deer-vehicle collisions and impacts on native plants the
most frequently reported issues (Frost et al. 1997, Porter 1997). For
example, six of nine national park units within the western Great Lakes
region contain overabundant white-tailed deer populations that have or
are presently adversely affecting native vegetation (e.g., Robinson
1980, Balgooyen and Waller 1995, EDAW 2003). Development of long-term
monitoring and associated research is considered necessary to resolve
these issues and ensure effective deer management (Waller and Alverson
1997).
Numerous techniques are available to monitor white-tailed deer
abundance including aerial surveys, spotlighting, forward-looking
infrared, and pellet counts (e.g., Beringer et al. 1998, Belant and
Seamans 2000). More recently, genetic markers (e.g., microsatellite DNA)
have been identified for numerous wildlife species (e.g., Foran et al.
1997). For example, a microsatellite DNA panel has been developed for
white-tailed deer and validated for several populations (Anderson et al.
2002, DeYoung et al. 2003). Individual assignment testing for assessing
natal origin can be used to determine dispersal and population history
(Beaumont and Bruford 1999 [in DeYoung et al. 2003]), in addition to
monitoring abundance and population estimates that include estimates of
precision (Foran et al. 1997). An important advantage of using hair for
DNA analysis is that it can be obtained from flee-ranging animals
without capture (e.g., Belant 2003, Belant et al. 2005).
Although hair snares have been developed for several wildlife
species (Raphael 1994, Foran et al. 1997, Woods et al. 1999, McDaniel et
al. 2000, Belant 2003), we are unaware of any techniques used to
noninvasively collect hair from free-ranging white-tailed deer.
Development of a hair snare could provide a cost-effective and accurate
means to monitor deer abundance or estimate their population size in
areas where deer are not harvested or where other techniques are
impractical (e.g., large roadless forested areas). Our goal was to
develop a noninvasive method for monitoring abundance and determining
genetic relatedness of white-tailed deer. Specifically, we sought to
determine the effectiveness of barbed wire to remove hair that is
suitable for determining genotype from free-ranging white-tailed deer.
MATERIALS AND METHODS
Study Area
We conducted initial trials at the National Aeronautic and Space
Administration's Plum Brook Station (PBS), Erie County, Ohio (41[degrees] 22' N, 82[degrees] 41' W). The 22-[km.sup.2]
facility is enclosed by a 2.4 m high chain-link fence with barbed-wire
outriggers. Deer ingress and egress occurs through several gaps between
the fence and ground. Vegetation within PBS consisted of canopy dogwood shrubs (Cornus spp.), grasslands, open woodlands, and mixed hardwood
forests (Rose and Harder 1985). Estimated deer density during winter
2004-2005 was 54/[km.sup.2] (J. Cepek, U.S. Department of Agriculture,
personal communication).
Field trials also were conducted at Sleeping Bear Dunes National
Lakeshore (SBDNL), Pictured Rocks National Lakeshore (PRNL), and Grand
Island National Recreation Area (GINRA). Sleeping Bear Dunes National
Lakeshore comprises 242 [km.sup.2] and is located in the northwestern
Lower Peninsula of Michigan (44[degrees] 77' N, 86[degrees]
05' W). North Manitou Island (NMI; 60.7 [km.sup.2]) and South
Manitou Island (SMI; 20.2 [km.sup.2]) are part of SBDNL and are each
located about 11 km from the mainland. Dominant overstory vegetation
types on the mainland portion of SBDNL are coastal forests (including
red oak [Quercus rubra] and jack pine [Pinus banksiana] and mixed
northern hardwood forests (including sugar maple [Acer saccharum] and
American beech [Fagus grandifolia]) (Hazlett 1991). Overstory vegetation
on NMI and SMI is predominantly American beech-sugar maple forest
followed by mixed hardwood and conifer forests. Deer from captive stock
were released on NMI during 1926 (McCullough and Case 1982). Deer
apparently were not native to SMI and are believed to have emigrated
from NMI located about 5.0 km northeast of SMI. Estimated deer density
on the mainland portion of SBDNL during October 2004 was seven to 10
individuals/[km.sup.2] (T. Minzey, Michigan Department of Natural
Resources [MDNR], personal communication). Estimated deer densities on
NMI and SMI were about three and <1/[km.sup.2], respectively (S.
Yancho, SBDNL, personal communication).
Pictured Rocks National Lakeshore (280 [km.sup.2]) is in the
northcentral Upper Peninsula of Michigan (46[degrees]33' N,
86[degrees]20, W) along Lake Superior. About 59% of PRNL is dominated by
northern hardwood forests containing predominantly sugar maple and
American beech. Ten percent of PRNL contains upland conifer stands
including red pine (Pinus resinosa), white pine (P. strobes), and jack
pine. Estimated deer density in PRNL during October 2004 was about three
individuals/[km.sup.2] (T. Minzey, MDNR, personal communication).
Grand Island National Recreational Area (GINRA) is a 54.6
[km.sup.2] island administered by the U.S. Forest Service and located in
Lake Superior about 1.0 km offshore from the western portion of PRNL.
Dominant vegetation types include northern hardwood and mixed hardwood
and conifer forests similar to PRNL (M. Cole, U.S. Forest Service,
unpublished data). Deer density on GINRA is unknown but was estimated to
be comparable to PRNL (T. Minzey, MDNR, personal communication).
Hair Snares
During December 2004we established eight 6.1 x 6.1-m feeding sites
(Seamans et al. 2002) each [greater than or equal to] 0.9 km from the
nearest site. These sites were part of along-term study to investigate
techniques to abate deer damage (Belant et al. 1998a,b, Seamans et al.
2002). Feeding sites were selected based on deer activity and to
maximize distance between individual sites. At each site a plastic snow
fence 1.5 m high was erected on three sides with a 1.2 m long livestock
feed trough centered within the fenced area and 1.0 m from the rear
fence. Whole-kernel corn was placed in troughs as bait. An active
infrared monitoring device (Trailmaster[R], Goodson and Associates,
Incorporated, Lenexa, Kansas) was installed 60 cm above ground at the
open side of each feeding site to continually monitor the number of deer
intrusions as an index of activity and avoid recording non-target
species (e.g., raccoon [Procyon lotor], fox squirrel [Sciurus niger]). A
single strand of 15.5-gauge, four-point barbed wire was attached across
the enclosure and above the leading edge of the feed trough such that
deer attempting to feed would contact the wire. Wire height was assigned
randomly to sites (n = four sites/height treatment) such that barbed
wire strands were 70 or 80 cm above ground representing 20 or 30 cm
above the feed trough. Sites were maintained for two weeks and monitored
every two to three days; corn was added as necessary. During each
inspection we recorded the number of events displayed on TrailMaster
units and removed hair samples from each of the nine barbs that were
directly above the feed trough. Each hair sample, defined as the total
number of deer hairs on an individual barb, was placed in a separate
envelope and air dried until analysis. To determine if relative deer
activity at bait sites was associated with the number of hair samples
obtained, we compared event counts recorded on TrailMaster units with
number of hair samples collected during each site visit.
Within 15 m of each bait site we also established snares along
active deer trails by placing a single strand of barbed wire across one
to two trails leading to the bait site. We placed wire over trails which
received the greatest apparent deer use. Wire heights (80 or 90 cm) were
assigned to trails similarly to feed sites (n = four sites/treatment).
At two sites we placed 80-cm high snares across two trails; remaining
sites received snares over one trail. Wire heights allowed deer to pass
under the wire and snare hair from the neck or back. We collected hair
samples from trail snares every two to three days during the two-week
period that bait sites were sampled and at one to three day intervals
for two additional weeks. Although multiple deer trails entered each
area, we used recorded events displayed on TrailMaster units as a
general index of deer activity. We recorded the total number of barbs
available for snaring hair as the number of barbs directly above the
impacted trail plus one additional barb on either side of the trail. No
attractants were used at trail snares. As with baited snare sites, we
compared event counts recorded on TrailMaster units with the number of
hair samples collected from each trail snare during each visit. Also,
whenever conditions were suitable (e.g., snow was present), we searched
for deer tracks on trails near snares to determine whether deer avoided
or walked under snares. We combined trail snares by snare height and
week to calculate the percentage of trail snares used and avoided by
deer.
We established 12 hair snares at SBDNL during 1-3 May 2005; two on
the mainland, six on NMI, and four on SMI. Snares were located in areas
thought to maximize deer encounters but not directly on trails to avoid
potential animal injury. Each snare consisted of a single strand of
barbed wire with four sides 60-65 cm long and 46 cm above ground (Fig.
1) and was intended to snare hair from the throat or neck of a deer.
Wire was typically attached to the outside of a tree and with stakes (76
cm length) containing washers welded on one end that supported remaining
corners. Snares were constructed by driving stakes into the ground,
passing the barbed wire through the washers, then stapling the wire ends
to the tree. We applied about 1.9 L of BuckJam[R] (Evolved Habitats, New
Roads, Louisiana 70760, USA) onto logs positioned in the center of each
snare. BuckJam is a combination scent and mineral attractant. Commercial
skunk essence was applied to trees at bait sites on North Manitou
Island. Snares were checked every two weeks through July and an
additional 1.9 L of attractant was added to each site during mid-June.
During late June and July 2005, we established 20 hair snares at
PRNL and three hair snares at GINRL. As at SBDNL, we constructed snares
near recent deer activity but avoided placing snares directly on game
trails. Snares consisted of single strands of barbed wire attached to
the outside of three to four trees using fence staples similar to Belant
et al. (2005) but positioned 80 cm above ground. We removed leaf litter
or added woody debris as necessary to ensure consistent wire height. We
similarly applied 1.9 L BuckJam to logs placed in the center of the
enclosure. Snares were checked on three to four occasions at one- (PRNL)
or two-week (GINRA) intervals.
For all trials, during each snare check we placed hair samples from
each barb in separate envelopes. Each hair sample was classified as
Category 1 or 2, which represented the number of guard hairs with
follicles collected. Follicles from four underfur hairs contain about
the same amount of DNA as one guard hair and were included in Category
classification assignments. Thus, Category 1 samples contained [greater
than or equal to] 1 but <3 guard hairs of DNA material and Category 2
samples contained [greater than or equal to] 3 guard hairs. Category 2
samples represent at least a 90% probability of determining individual
identity of a white-tailed deer. To assess suitability of samples for
DNA extraction, we processed 53 samples (winter hair) from four baited
sites at PBS separated by 0.9-1.0 km. All mean and standard deviations
were calculated using SAS (SAS 1988).
[FIGURE 1 OMITTED]
Genetic Analyses
To increase probability of determining individual genotype, all DNA
analyses were performed using Category 2 hair samples. We used 10 guard
hairs for extraction when possible to reduce the probability of
genotyping errors (Gossens et al. 1998). We used 12 microsatellite loci
for analyses of individual identity: Rt07, BL42, Rt05, OhP, OvA, BM6506,
Rt24, Rt13, OhD, OhN, BM4107, and OvH. Locus BL42 was described by
Bishop et al. (1994); remaining loci have been deposited on Genbank
(www.ncbi. nlm.nig.gov). We conducted DNA extractions using QIAGEN
DNeasy Tissue kits (Qiagen Inc., Mississiauga, Ontario, Canada),
following the manufacturer's instructions.
We used the software GENEPOP (Raymond and Rousset 1995) to
calculate observed and expected heterozygosity and the number of alleles
present at each locus. We examined distribution of genotype similarity
to estimate the probability of two or more sampled individuals having
identical genotypes at the six loci we examined. The observed numbers of
pairs of similar genotypes were used to estimate the expected number of
pairs of identical genotypes (0 mismatching marker [MM] pairs; Paetkau
2003). The typical pattern reflects an order of magnitude decline with
each successive decrease in number of mismatching markers. Thus one
would expect a single error for every 10 1MM pairs (Paetkau 2003).
RESULTS
Hair Trapping
At PBS, the number of Category 2 and total hair samples obtained
from baited snare sites increased with deer activity (Fig. 2). Rates of
increase appeared similar for both snare heights; however, the number of
Category 2 samples obtained from snares 80 cm above ground appeared to
increase at a greater rate. Hair samples were collected from baited
snare sites during 98% of checks. Overall, 59% of hair samples collected
were classified as Category 2.
At PBS, no relationship was observed in the number of Category 2 or
total hair samples obtained on trails relative to snare height or deer
activity (Fig. 3). Hair samples were obtained from trail snares during
31% of checks. Overall, 76% of hair samples collected were Category 2.
Deer avoidance exceeded use of trail snares during week one (Fig. 4).
Evidence of avoidance continued at about 50% of sites through week four
in contrast to deer use increasing to 7085% during weeks two through
four. Combined activity exceeded 100%, as some sites had evidence of use
and avoidance of snares.
The mean number of hair samples collected at SBDNL decreased from
about 3.5 per snare in May to about one per snare during July (Fig. 5).
Although the number of barbs available for snagging hair at PRNL was
greater than at SBDNL, the mean number of hair samples collected in July
was 1.4 per snare and then increased to 2.1 per snare in late August.
The overall percentage of Category 2 samples at SBDNL was 72% during
May-June and 27% during July; percentage of Category 2 samples at PRNL
was 27%.
The mean number of hair samples collected at two-week intervals
GINRA was 4.4 per snare, slightly greater than twice the rate samples
were collected at PRNL at one-week intervals. Twenty-six percent of hair
samples collected at GINRA were Category 2.
At several sites in Michigan study areas, slight cratering of the
soil was observed apparently from deer attempting to ingest minerals
from the attractant. Although no evidence of injuries was observed for
deer or other wildlife entering snare sites, the wire from one side of a
snare at PRNL was pulled from the tree. Barbed wire was bent on several
occasions at hair snares at SBDNL and required straightening.
Additionally, 19 samples at snares from SBDNL were collected from the
ground.
DNA Analyses
Of the 53 winter hair samples analyzed from PBS, only one (2%)
lacked adequate DNA for determining genotype. Degradation of this sample
in the field was suspected as a suitable number of guard hairs (n =
four) for extraction were collected. Twelve additional samples (23%)
produced clear evidence of [greater than or equal to] 3 alleles,
suggesting these samples contained hair from [greater than or equal to]
2 deer. The remaining 40 samples produced good genetic data and
comprised 23 distinct genotypes. The most similar pairs of genotypes
differed at four of the six markers (4MM pairs) with greatest [H.sub.E]
(Table 1), suggesting it is highly unlikely that we sampled any single
pair of individuals with identical six-locus genotypes.
The number of alleles for the 12 markers used to identify these 23
individuals ranged from five in marker OvH to 11 in Rt07; mean allelic
diversity was 8.2 alleles per locus (Table 1). Mean observed
heterozygosity (0.75) was similar to mean expected heterozygosity
(0.77).
[FIGURE 2 OMITTED]
The number of samples obtained from individual deer ranged from one
to six. Twenty-one deer were identified from one baited site and two
deer were identified from the two baited sites located 1.0 km apart.
This suggests that deer use of sites, and likely movements between
sites, was low during the period that hair samples were collected.
DISCUSSION
Barbed wire snares were effective for non-invasively obtaining hair
samples from free-ranging white-tailed deer under a wide range of
densities (3-54/[km.sup.2]). We obtained many samples of sufficient
quantity and quality for determining genotype. Several aspects of this
technique could potentially be enhanced to improve efficacy. The
attractant we used at SBDNL, PRNL, and GINRA was a combination of food
scent and minerals. The premise was that deer would be attracted
initially to the food scent and encounter the mineral component which
would result in repeated use. An advantage of this type of attractant
was that sites did not require reapplication of bait during each check
session, in contrast to studies of other species where attractant was
reapplied during each check session (e.g., Belant et al. 2005). Indeed,
in some cases we did not reapply attractant for up to six weeks, yet
deer continued using sites. This duration should be adequate for many
field studies including population enumeration. However, numerous baits
and scents are available to attract white-tailed deer, especially those
developed by commercial manufacturers for sport hunting. Prebaiting
sites until deer use is consistent may also facilitate obtaining hair
samples. Improving attractiveness of bait used or bait delivery would
increase deer activity at snare sites and consequently the number of
hair samples obtained.
[FIGURE 3 OMITTED]
In general, the number of hair samples and amount of hair collected
in individual samples was greatest during winter and spring and declined
considerably during summer. The fewer number of hair samples obtained,
particularly during summer, was attributed in part to working in areas
of lower deer density at that time of year. Other factors that likely
reduced the number of samples and amount of hair obtained during summer
were availability of alternate foods and decreased effectiveness of
barbed wire to snag and hold guard hairs from summer pelage. Although
not quantified, the longer and larger-diameter winter guard hairs
appeared to entangle more readily in the barbs than did the shorter,
narrow diameter summer guard hairs. We suspect that largest hair samples
would be obtained during spring when deer are shedding winter hair.
Conducting projects during spring also would be advantageous
because herbaceous vegetation has not yet fully emerged and deer access
to snare sites after snowmelt would be energetically easy, particularly
in areas of high snowfall. Although a large number of samples can be
obtained during winter, snow pack may hamper logistics and snowfall
would cover bait, reducing efficacy. Changing snow depth during conduct
of a study could also affect snare height and limit the number of
samples obtained. However, winter projects in areas with little or no
snowfall should yield good results. Because of decreased quantity and
quality of hair samples collected, we do not recommend conducting
large-scale projects after June or before winter hair is acquired.
Be cause of the substantial and consistent avoidance of hair snares
on trails by deer, they may not be appropriate for some applications. It
is possible to have bias relative to sex or age classes of deer as
males, particularly mature males, are known to have movement patterns
different from other cohorts (Marchington and Hirth 1984). However,
collection of hair samples from trails may be appropriate for assessing
genetic relatedness between populations or genetic dispersal rates. The
comparatively high percentage of Category 2 samples would also
facilitate DNA analyses.
[FIGURE 4 OMITTED]
Deer density and the time of year studies are conducted will
influence the frequency hair snares should be checked. The seven-or
14-day check intervals we used appeared suitable for collecting hair
samples in our Michigan study areas during spring-summer with low to
medium deer densities. This is similar to the interval used for bears
(Ursus spp.; Woods et al. 1999, Belant et al. 2005). However, more
frequent check intervals are likely warranted in areas of high deer
density. Using a check interval of one to three days at PBS with an
estimated density of 54 deer/[km.sup.2], 23% of our samples were from
> 1 deer. Standardizing check intervals to one day would probably
have reduced the percentage of mixed samples. Another alternative would
involve analyzing an individual hair from each sample; however, the
probability of determining genotype would be reduced. Finally, deer at
PBS had restricted access to bait by being forced to enter from only one
side of the site containing a 6.1 m length of barbed wire. Increasing
the number of barbs available at each site by constructing a larger
snare or having all sides of the area containing snare material may
spatially separate deer when entering the site and reduce the number of
mixed samples. Further investigations refining snare check intervals at
varying deer densities to maximize the total number of hair samples
while minimizing mixed hair samples collected are warranted.
[FIGURE 5 OMITTED]
We recommend use of barbed wire attached to >3 trees and
positioned about 80 cm above ground in forested areas. Cost of materials
(wire and staples) to construct a snare using trees was about US $1;
lure was about US $4. Stakes could be used as supports for wire in place
of trees in non-forested areas as we did at SBDNL. Alternatively, fence
posts could be used to elevate wire 80 cm above ground. We do not
recommend using the small snare we employed at SBDNL in areas of high
density deer because of the limited number of barbs available and the
increased likelihood of mixed samples.
Our use of Category assignments in the field was corroborated by
the success of our DNA extraction from winter hair samples. Assigning
Category class to samples based on the amount of hair/ follicular material available can facilitate selection of samples to submit for
analysis, which will improve success rate and reduce overall costs.
A previous limitation of this technique was our inability to
determine gender from hair samples. However, Lindsay and Belant (2007)
recently developed a simple sexing technique suitable for use with hair
samples. Consequently, demographic aspects including sex-mediated gene
flow (e.g., Paetkau et al. 1998) can now be addressed using this
technique.
Although many techniques have been developed to assist wildlife
practitioners in understanding deer ecology, hair snares may provide a
practical alternative in situations where other methods are impractical.
For example, extensive forested areas with limited roads that occur in
many National Park Service units precludes the use of spotlight,
infrared, or aerial surveys as monitoring techniques for white-tailed
deer. Although study objectives will in large part dictate techniques
used, cost is also an important consideration. Field costs of
constructing and checking snares will typically be inexpensive relative
to the costs of genetic analyses, which can easily exceed $40/hair
sample. However, the number of commercial and university labs that
perform DNA analyses has increased considerably in recent years and
costs have actually decreased in some situations. We recommend that
researchers conduct a cost-benefit analysis of relevant techniques
before initiating a DNA-based study.
We demonstrated application of DNA-based non-invasive sampling of
free-ranging white-tailed deer to assess degree of deer movements
between research study sites at PBS. There are numerous additional
applications in ecological field studies including species distribution,
genetic lineage and population origin, and monitoring population
abundance. As has been done with other species (e.g., Woods et al. 1999,
Belant et al. 2005), repeated collection of hair samples at snare sites
and use of mark-recapture methods or possibly distance sampling could be
used to enumerate deer population sizes that would include estimates of
precision. We also believe this technique has application for other
ungulate species. Modifications of wire height, size of snare enclosure,
and attractant used may be necessary depending on the species studied.
ACKNOWLEDGEMENTS. We thank D. Helon and B. Beason for field
assistance at PBS; D. Parks, K. Struthers, and S. Yancho for their
efforts at SBDNL; K. Anderson, J. Chapman, L. Kruger, M. Snively, and J.
Wolford for assistance at PRNL; and M. Cole and L. Langstaff for
assistance on GINRA. R. Prive was responsible for the genetic analysis.
We appreciated the thoughtful comments from E. Beever, D. Licht, W.
Route, and R. Vanderhoof on an earlier draft of this manuscript. Funding
for this project was provided by the National Park Service's
Pictured Rocks Science Center, Great Lakes Inventory and Monitoring
Network, and Great Lakes Research and Education Center; the U.S.
Department of Agriculture (USDA), Wildlife Services, National Wildlife
Research Center; and the USDA Forest Service, Hiawatha National Forest.
LITERATURE CITED
Anderson JD, Honeycutt RL, Gonzales RA, Gec KL, Skow LK, Gallagher
RL, Honeycutt DA, DeYoung RW. 2002. Development of microsatellite DNA
markers for the automated genetic characterization of white-tailed deer
populations. J Wildl Manage 66:67-74.
Beaumont MA, Bruford MW. 1999. Microsatellites in conservation
genetics. Pages 165-182 in D. B. Goldstein and C. Schlotterer, eds.
Microsatellites: evolution and applications. Oxford University Press.
New York.
Belant JL. 2003. A hair snare for forest carnivores. Wildl Soc Bull
31:482-485.
Belant JL, Seamans TW. 2000. Comparison of three devices for
monitoring white-tailed deer at night. Wildl Soc Bull 28:154-158.
Belant JL, Seamans TW, Tyson LA. 1998a. Comparison of three
electronic frightening devices as white-tailed deer deterrents. Proc
Vertebr Pest Conf 18:107-110.
Belant JL, Seamans TW, Tyson LA. 1998b. Predator urines as chemical
barriers to white-tailed deer. Proc Vertebr Pest Conf 18:359-362.
Belant JL, Van Stappen JF, Paetkau D. 2005. American black bear
population size and genetic diversity at Apostle Islands National
Lakeshore. Ursus 16:85-92.
Balgooyen C P, Waller DM. 1995. The use of Clintania borealis and
other indicators to gauge impacts of white-tailed deer on plant
communities in northern Wisconsin, USA. Nat Areas J 15:308-318.
Bishop MD, Kappes SM, Keele JW, Stone RT, Sunden SLE Hawkins GA,
Toldo SS, Fries R, Grosz MD, Yoo J, Beattie CW. 1994. A genetic linkage
map for cattle. Genetics 136:619-639.
Conover MR. 1997. Monetary and intangible valuation of deer in the
United States. Wildl Soc Bull 25:298-305.
Conover MR, Pitt WC, Kessler KK, DuBow TJ, Sanborn WA. 1995. Review
of human injuries, illnesses, and economic losses caused by wildlife in
the United States. Wildl Soc Bull 23:407-414.
deCalesta DS. 1994. Effect of white-tailed deer on songbirds within
managed forests in Pennsylvania. J Wildl Manage 58:711-717.
DeYoung RW, Demarais S, Honeycutt RL, Gonzales RA, Gee KL, Anderson
JD. 2003. Evaluation of a DNA microsatellite panel useful for genetic
exclusion studies in white-tailed deer. Wildl Soc Bull 31:220-232.
EDAW 2003. Deer management plan: Final internal scoping report,
Indiana Dunes National Lakeshore, National Park Service. EDAW, Inc.,
Denver, Colorado, USA. 30 p.
Foran DR, Minta SC, Heinemeyer KS. 1997. DNA-based analysis of hair
to identify species and individuals for population research and
monitoring. Wildl Soc Bull 25:840-847.
Frankland F, Nelson T. 2003. Impacts of white-tailed deer on spring
wildflowers in Illinois, USA. Nat Areas J 23:341-348.
Frost HC, Storm GL, Batcheller MJ, Lovallo MJ. 1997. White<ailed
deer management at Gettysburg National Military Park and Eisenhower
National Historic Site. Wildl Soc Bull 25:462-469.
Gossens B, Waits LP, Taberlet P. 1998. Plucked hair samples as a
source of DNA: reliability ofdinucleotide microsatellite genotyping. Mol
Ecol 7:1237-1241.
Hazlett BT. 1991. The flora of Sleeping Bear Dunes National
Lakeshore, Benzie and Leelanau counties, Michigan. Mich Botanist
30:139-202.
Lindsay AR, Belant JL. 2007. A simple and improved PCR-based
technique for white-tailed deer (Odocoileus virginianus) sex
identification. Conserv Genet 8:in press.
Marchington RL, Hirth DH. 1984. Behavior. Pages 129-168 in
White-tailed deer ecology and management, L. K. Halls, ed. Stackpole
Books, Harrisburg, Pennsylvania, USA.
McCullough DR, Case DJ. 1982. The white-tailed deer of North
Manitou Island, Michigan. Unpublished Report, National Park Service,
Sleeping Bear Dunes National Lakeshore, Empire, Michigan, USA 189 p.
McDaniel GW, McKelvey KS, Squires JR, Ruggiero LE 2000. Efficacy of
lures and hair snares to detect lynx. Wildl Soc Bull 28:119-123.
Miller SG, Bratton SP, Hadidian J. 1992. Impacts of white-tailed
deer on endangered plants. Nat Areas J 12:67-74.
National Park Service. 2000. National Park Service management
policies 2001. National Park Service, Washington, D.C., USA. 64 p.
Ostfeld RS, Jones CG, Wolff JO. 1996. Of mice and mast: ecological
connections in eastern deciduous forests. BioSci 46:323-330.
Otis DL, Burnham KP, White G C, Anderson D R. 1978. Statistical
inference from capture data on closed animal populations. Wildl Monogr
62.
Paetkau D. 2003. An empirical exploration of data quality in
DNA-based population inventories. Mol Ecol 12:1375-1387.
Paetkau D, Shields GF, Strobeck C. 1998. Gene flow between insular,
coastal and interior populations of brown bears in Alaska. Mol Ecol
7:1283-1292.
Pedersen BS, Wallis AM. Effects of white-tailed deer herbivory on
forest gap dynamics in a wildlife preserve, Pennsylvania, USA. Nat Areas
J 24:82-94.
Porter WF. 1997. Ignorance, arrogance, and the process of managing
overabundant deer. Wildl Soc Bull 25:408-412.
Raphael MG. 1994. Techniques for monitoring populations of fishers
and American martens. Pages 224-240 in S. W. Buskirk, A. S. Harestad, M.
G. Raphael, and R. A. Powell, eds. Martens, sables, and fishers biology
and conservation. Cornell University Press, Ithaca, New York, USA.
Raymond M, Rousset F. 1995. GENEPOP (V. 1.2): a population genetics
software for exact tests and ecunemicism. J Hered 86:248-249.
Rexstad E, Burnham K. User's guide for interactive program
CAPTURE. Colorado Cooperative Fish and Wildlife Research Unit, Fort
Collins, Colorado, USA. 16p.
Rose J, Harder JD. 1985. Seasonal feeding habits of an enclosed
high density white-tailed deer herd in northern Ohio. Ohio J Sci
85:184-190.
SAS Institute. 1988. SAS user's guide, Version 6.03. SAS
Institute, Cary, North Carolina, USA. 1,076 p.
Seamans TW, Blackwell BF, Cepek JD. 2002. Coyote hair as an area
repellent for white-tailed deer. Internatl J Pest Manage 48:301-306.
Shafer-Nolan AL. 1997. The science and politics of deer
overabundance at Cuyahoga Valley National Recreation Area, Ohio. Wildl
Soc Bull 25:457-461.
Waller DM, Alverson WS. 1997. The white-tailed deer: a keystone
herbivore. Wildl Soc Bull 25:217-226.
Warren RJ. 1997. The challenge of deer overabundance in the 21st
century. Wildl Soc Bull 25:213-214.
White GC, Andersen DR, Burnham KP, Otis DL. 1982. Capture-recapture
and removal methods for sampling closed populations. Los Alamos National
Laboratory LA-8787-NERP 128 p.
Woods JG, Paetkau D, Lewis D, McLellan BN, Proctor M, Strobeck C.
1999. Genetic tagging free ranging black and brown bears. Wildl Soc Bull
27:616-627.
JERROLD L. BELANT (1), THOMAS W. SEAMANS, AND DAVID PAETKAU,
National Park Service, Pictured Rocks Science Center, Munising, MI; U.S.
Department of Agriculture, National Wildlife Research Center, Sandusky,
OH; and Wildlife Genetics International, Nelson, BC, Canada.
(1) Corresponding author: Jerrold L. Belant, National Park Service,
Pictured Rocks Science Center, Box 40, Munising, MI 49862. Phone:
906-387-4818. Fax: 906-387-2029. Email:
[email protected]
Table 1
Locus name, allelic diversity (alleles/locus), expected heterozygosity
([H.sub.E]), observed heterozygosity ([H.sub.O]), and Genbank reference
for 12 microsatellite loci for white-tailed deer, Plum Brook Station,
Ohio, December 2004.
Locus Alleles [H.sub.E] [H.sub.O] Species of origin
Rt07 11 0.89 0.91 Rangifer tarandus
BL42 8 0.87 0.87 Bos taurus
Rt05 9 0.84 0.83 Rangifer tarandus
OhP 8 0.84 0.78 O. hemionus
OvA 10 0.83 0.91 O. virginianus
BM6506 9 0.80 0.70 Bos taurus
6-locus mean 9.2 0.84 0.83
Rt24 7 0.74 0.65 Rangifer tarandus
Rt13 7 0.71 0.70 Rangifer tarandus
OhD 8 0.71 0.70 O. hemionus
OhN 9 0.68 0.74 O. hemionus
BM4107 6 0.67 0.70 Bos Taurus
OvH 5 0.54 0.43 O. virginianus
12-locus mean 8.2 0.77 0.75
Locus Genbank reference
Rt07 U90740
BL42 (a)
Rt05 U90738
OhP AF102240
OvA L35576
BM6506 G18455
6-locus mean
Rt24 U90746
Rt13 U90743
OhD AF1022
OhN AF102244
BM4107 G18519
OvH L35583
12-locus mean
(a) Bishop et al. (1994)