文章基本信息

标题：Reconfigurable FPGA Inter-Connect For Optimized High Speed DNA Sequencing
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作者：A.Nandhini ; C.Ramalingam ; N.Maheswari 等
期刊名称：International Journal of Communication and Computer Technologies
印刷版ISSN：2278-9723
出版年度：2014
卷号：2
期号：1
出版社：IJCCTS
摘要：In the world of expanding set of biological species finding repetitive structures in genomes and proteins is important to understand their biological functions. If the number of maximal repeat increases then finding those structures becomes tedious. In existing method Burrows Wheeler Transform and Wavelet Coding the major disadvantage is time consumption. And it also needs huge computer space for processing the structures. In our method we are going to propose a time, memory and speed optimized algorithms for efficient repetitive finding in genomes and proteins
关键词：Bioinformatics; pattern matching; sequence alignment; FPGA implementation