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标题：Chromosome-level assembly of Gymnocypris eckloni genome
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作者：Fayan Wang ; Lihan Wang ; Dan Liu 等
期刊名称：Scientific Data
电子版ISSN：2052-4463
出版年度：2022
卷号：9
期号：1
页码：1-8
DOI：10.1038/s41597-022-01595-w
语种：English
出版社：Nature Publishing Group
摘要：Gymnocypris eckloni is widely distributed in isolated lakes and the upper reaches of theYellow River and play signifcant roles in the trophic web of freshwater communities. In this study, we generated a chromosome-level genome of G. eckloni using PacBio, Illumina and Hi-C sequencing data. The genome consists of 23 pseudo-chromosomes that contain 918.68 Mb of sequence, with a scafold N50 length of 43.54 Mb. In total, 23,157 genes were annotated, representing 94.80% of the total predicted protein- coding genes. The phylogenetic analysis showed that G. eckloni was most closely related to C. carpio with an estimated divergence time of ~34.8 million years ago. For G. eckloni, we identifed a high- quality genome at the chromosome level. This genome will serve as a valuable genomic resource for future research on the evolution and ecology of the schizothoracine fsh in the Qinghai-Tibetan Plateau.