文章基本信息

标题：Homeostasis of the biosynthetic E. coli metabolome
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作者：Dušica Radoš ; Stefano Donati ; Martin Lempp 等
期刊名称：iScience
印刷版ISSN：2589-0042
出版年度：2022
卷号：25
期号：7
页码：1-13
DOI：10.1016/j.isci.2022.104503
语种：English
出版社：Elsevier
摘要：SummaryMetabolite concentrations vary across conditions and such metabolome changes are relevant for metabolic and gene regulation. Here, we used LC-MS/MS to explore metabolite concentration changes inEscherichia coli. We measured 101 primary metabolites in 19 experimental conditions that include various nutrients and stresses. Many metabolites showed little variation across conditions and only few metabolites correlated with the growth rate. The least varying metabolites were nucleotides (e.g. UTP had 10% variation) and amino acids (e.g. methionine had 13% variation). These results show thatE. colimaintains protein and RNA building blocks within narrow concentration ranges, thus indicating that many feedback mechanisms in biosynthetic pathways contribute to end-product homeostasis.Graphical abstractDisplay OmittedHighlights•101E colimetabolites were measured in 19 conditions•Biosynthetic end-products vary little between conditions•Few metabolites correlate with the growth rate•Metabolome data identify active regulatory metabolitesMicrobiology; Microbial physiology; Omics; Metabolomics