文章基本信息

标题：pSNAP: Proteome-wide analysis of elongating nascent polypeptide chains
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作者：Junki Uchiyama ; Rohini Roy ; Dan Ohtan Wang 等
期刊名称：iScience
印刷版ISSN：2589-0042
出版年度：2022
卷号：25
期号：7
页码：1-19
DOI：10.1016/j.isci.2022.104516
语种：English
出版社：Elsevier
摘要：SummaryCellular global translation is often measured using ribosome profiling or quantitative mass spectrometry, but these methods do not provide direct information at the level of elongating nascent polypeptide chains (NPCs) and associated co-translational events. Here, we describe pSNAP, a method for proteome-wide profiling of NPCs by affinity enrichment of puromycin- and stable isotope-labeled polypeptides. pSNAP does not require ribosome purification and/or chemical labeling, and capturesbona fideNPCs that characteristically exhibit protein N-terminus-biased positions. We applied pSNAP to evaluate the effect of silmitasertib, a potential molecular therapy for cancer, and revealed acute translational repression through casein kinase II and mTOR pathways. We also characterized modifications on NPCs and demonstrated that the combination of different types of modifications, such as acetylation and phosphorylation in the N-terminal region of histone H1.5, can modulate interactions with ribosome-associated factors. Thus, pSNAP provides a framework for dissecting co-translational regulations on a proteome-wide scale.Graphical abstractDisplay OmittedHighlights•Nascent polypeptidome analysis with a simplified protocol•Quantification of acute changes in nascent polypeptides induced by external stimuli•Profiling and characterization of chemical modifications on nascent polypeptidesBiological sciences; Biochemistry; Biochemistry methods; Cell biology; Methodology in biological sciences