文章基本信息

标题：Comparative transcriptomic analysis of in situ and onboard fixed deep-sea limpets reveals sample preparation-related differences
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作者：Guoyong Yan ; Yi Lan ; Jin Sun 等
期刊名称：iScience
印刷版ISSN：2589-0042
出版年度：2022
卷号：25
期号：4
页码：1-15
DOI：10.1016/j.isci.2022.104092
语种：English
出版社：Elsevier
摘要：SummaryPrecise gene expression reflects the molecular response of deep-sea organisms to their harsh living environments. However, changes in environmental factors during lifting samples from the deep sea to a research vessel can also affect gene expression. By using the transcriptomic approach, we compared the gene expression profiles of the onboard fixed with thein situfixed samples of the deep-sea limpetBathyacmaea lactea. Our results revealed that the concomitant stress during conventional deep-sea sampling without RNAin situfixation greatly influenced the gene expression. Various biological activities, such as cell and tissue structure, lysosomal activity, fluid balance, and unsaturated fatty acid metabolism, were perturbed, suggesting that the sampling stress has exerted systemic impacts on the life of the limpets. These findings clearly illustrate that deep-sea samples without RNAin situfixation can easily lead to biased results in gene expression analysis, which requires to be appropriately addressed in future studies.Graphical abstractDisplay OmittedHighlights•Deep-sea sampling without RNAin situfixation influenced the gene expression greatly•Concomitant sampling stress perturbed various life activities of deep-sea limpets•Providing a high-qualityin situtranscriptome of limpetBathyacmaea lacteaBiotehnology; Marine biotechnology; Omics; Transcriptomics