文章基本信息

标题：RNAseq Analysis of Rodent Spaceflight Experiments Is Confounded by Sample Collection Techniques
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作者：San-Huei Lai Polo ; Amanda M. Saravia-Butler ; Valery Boyko 等
期刊名称：iScience
印刷版ISSN：2589-0042
出版年度：2020
卷号：23
期号：12
页码：1-37
DOI：10.1016/j.isci.2020.101733
语种：English
出版社：Elsevier
摘要：SummaryTo understand the physiological changes that occur in response to spaceflight, mice are transported to the International Space Station (ISS) and housed for variable periods of time before euthanasia on-orbit or return to Earth. Sample collection under such difficult conditions introduces confounding factors that need to be identified and addressed. We found large changes in the transcriptome of mouse tissues dissected and preserved on-orbit compared with tissues from mice euthanized on-orbit, preserved, and dissected after return to Earth. Changes due to preservation method eclipsed those between flight and ground samples, making it difficult to identify spaceflight-specific changes. Follow-on experiments to interrogate the roles of euthanasia methods, tissue and carcass preservation protocols, and library preparation methods suggested that differences due to preservation protocols are exacerbated when coupled with polyA selection. This has important implications for the interpretation of existing datasets and the design of future experiments.Graphical AbstractDisplay OmittedHighlights•Experimentation is necessary to understand how organisms respond to space•Specialized protocols are used for preserving biological samples on the ISS•RNAseq datasets are impacted by preservation protocols used on the ISS•Impacts can be alleviated with improved carcass preservation protocolsTranscriptomics; Space Sciences