文章基本信息

标题：The sequence and de novo assembly of hog deer genome
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作者：Wei Wang ; Hui-Juan Yan ; Shi-Yi Chen 等
期刊名称：Scientific Data
电子版ISSN：2052-4463
出版年度：2019
卷号：6
DOI：10.1038/sdata.2018.305
语种：English
出版社：Nature Publishing Group
摘要：Hog deer (Axis porcinus) is a small deer species in family Cervidae and has been undergoing a serious and global decline during the past decades. Chengdu Zoo currently holds a captive population of hog deer with sufficient genetic diversity in China. We sequenced and de novo assembled its genome sequence in the present study. A total of six different insert-size libraries were sequenced and generated 395鈥塆b of clean data in total. With aid of the linked reads of 10X Genomics, genome sequence was assembled to 2.72鈥塆b in length (contig N50, 66.04 Kb; scaffold N50, 20.55鈥塎b), in which 94.5% of expected genes were detected. We comprehensively annotated 22,473 protein-coding genes, 37,019 tRNAs, and 1,058鈥塎b repeated sequences. The newly generated reference genome is expected to significantly contribute to comparative analysis of genome biology and evolution within family Cervidae.