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标题：Metatranscriptome analyses indicate resource partitioning between diatoms in the field
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作者：Harriet Alexander ; Bethany D. Jenkins ; Tatiana A. Rynearson 等
期刊名称：Proceedings of the National Academy of Sciences
印刷版ISSN：0027-8424
电子版ISSN：1091-6490
出版年度：2015
卷号：112
期号：17
页码：E2182-E2190
DOI：10.1073/pnas.1421993112
语种：English
出版社：The National Academy of Sciences of the United States of America
摘要：SignificanceNutrient availability plays a central role in driving the activities and large-scale distributions of phytoplankton, yet there are still fundamental gaps in understanding how phytoplankton metabolize nutrients, like nitrogen (N) and phosphorus (P), and how this metabolic potential is modulated in field populations. Here, we show that cooccurring diatoms in a dynamic coastal marine system have apparent differences in their metabolic capacity to use N and P. Further, bioinformatic approaches enabled the identification and species-specific comparison of resource-responsive (RR) genes. Variation of these RR gene sets highlights the disparate transcriptional responses these species have to the same environment, which likely reflects the role resource partitioning has in facilitating the vast diversity of the phytoplankton. Diverse communities of marine phytoplankton carry out half of global primary production. The vast diversity of the phytoplankton has long perplexed ecologists because these organisms coexist in an isotropic environment while competing for the same basic resources (e.g., inorganic nutrients). Differential niche partitioning of resources is one hypothesis to explain this "paradox of the plankton," but it is difficult to quantify and track variation in phytoplankton metabolism in situ. Here, we use quantitative metatranscriptome analyses to examine pathways of nitrogen (N) and phosphorus (P) metabolism in diatoms that cooccur regularly in an estuary on the east coast of the United States (Narragansett Bay). Expression of known N and P metabolic pathways varied between diatoms, indicating apparent differences in resource utilization capacity that may prevent direct competition. Nutrient amendment incubations skewed N/P ratios, elucidating nutrient-responsive patterns of expression and facilitating a quantitative comparison between diatoms. The resource-responsive (RR) gene sets deviated in composition from the metabolic profile of the organism, being enriched in genes associated with N and P metabolism. Expression of the RR gene set varied over time and differed significantly between diatoms, resulting in opposite transcriptional responses to the same environment. Apparent differences in metabolic capacity and the expression of that capacity in the environment suggest that diatom-specific resource partitioning was occurring in Narragansett Bay. This high-resolution approach highlights the molecular underpinnings of diatom resource utilization and how cooccurring diatoms adjust their cellular physiology to partition their niche space.
关键词：phytoplankton ; diatom ; nutrient physiology ; niche partitioning ; metatranscriptomics